--- title: "comparison" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{comparison} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} --- ```{r, include = FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>", eval = FALSE ) ``` ```{r setup} library(icsp2) ``` ```{r} library(haven) idu <- read_dta("./local/idu.dta") ``` ```{r} idu_1 <- ic_sp_ph( Surv(ltime, rtime, type = "interval2") ~ age_mean + male + needle + inject + jail, data = idu ) idu_1_res <- summary(idu_1) within(as.data.frame(idu_1_res$coef_matrix), { HR = exp(Estimate) HR_u = exp(Estimate + 1.96 * Std.Error) HR_l = exp(Estimate - 1.96 * Std.Error) }) ```